Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cubico group peptidase, beta-lactamase class c family | SAMN05421639_101730 | Not Available | Positive | 770640 - 771680 | 39694.6 |
| arac-type dna-binding protein | SAMN05421639_101731 | Not Available | Positive | 771882 - 773018 | 43872.5 |
| protein of unknown function | SAMN05421639_101732 | Not Available | Positive | 773109 - 773651 | 20221.1 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421639_101733 | Not Available | Negative | 773807 - 774748 | 35570.7 |
| hypothetical protein | SAMN05421639_101734 | Not Available | Positive | 775533 - 775847 | 12369.3 |
| putative atp-dependent endonuclease of the old family | SAMN05421639_101735 | Not Available | Positive | 776149 - 777936 | 67407.1 |
| hypothetical protein | SAMN05421639_101736 | Not Available | Positive | 778237 - 778788 | 20599.0 |
| tonb-dependent receptor plug domain | SAMN05421639_101737 | Not Available | Positive | 779088 - 781478 | 89428.9 |
| uncharacterized conserved protein, implicated in type vi secretion and phage assembly | SAMN05421639_101738 | Not Available | Positive | 781782 - 783665 | 69476.9 |
| protein of unknown function | SAMN05421639_101739 | Not Available | Positive | 783757 - 785436 | 62531.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
