Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101640 | Not Available | Positive | 671581 - 671820 | 9377.61 |
| heat shock protein hslj | SAMN05421639_101641 | Not Available | Negative | 671872 - 672282 | 14387.4 |
| phenylalanyl-trna synthetase beta subunit | SAMN05421639_101642 | Not Available | Negative | 672647 - 675049 | 89887.6 |
| dna polymerase-3 subunit beta | SAMN05421639_101643 | Not Available | Negative | 675340 - 676470 | 41668.7 |
| diacylglycerol kinase (atp) | SAMN05421639_101644 | Not Available | Positive | 676673 - 677026 | 13309.7 |
| gamma-glutamyl cyclotransferase, aig2-like | SAMN05421639_101645 | Not Available | Negative | 677075 - 677407 | 12768.2 |
| lysophospholipase l1 | SAMN05421639_101646 | Not Available | Negative | 677407 - 678024 | 22960.5 |
| hypothetical protein | SAMN05421639_101647 | Not Available | Negative | 678168 - 678572 | 15394.2 |
| phosphoribosylformylglycinamidine synthase | SAMN05421639_101648 | Not Available | Negative | 679025 - 682720 | 136026.0 |
| cubico group peptidase, beta-lactamase class c family | SAMN05421639_101649 | Not Available | Negative | 682797 - 684221 | 53439.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
