Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101630 | Not Available | Negative | 664413 - 664745 | 12560.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421639_101631 | Not Available | Positive | 664853 - 665404 | 21649.9 |
| hypothetical protein | SAMN05421639_101632 | Not Available | Positive | 665385 - 665780 | 15281.8 |
| lactate dehydrogenase | SAMN05421639_101633 | Not Available | Negative | 665820 - 666797 | 36419.3 |
| hypothetical protein | SAMN05421639_101634 | Not Available | Negative | 666889 - 666981 | 3626.09 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN05421639_101635 | Not Available | Negative | 667455 - 668108 | 24569.9 |
| predicted dehydrogenase | SAMN05421639_101636 | Not Available | Positive | 668245 - 669207 | 36227.6 |
| beta-lactamase class a | SAMN05421639_101637 | Not Available | Positive | 669269 - 670147 | 32379.9 |
| hypothetical protein | SAMN05421639_101638 | Not Available | Positive | 670217 - 670624 | 15093.4 |
| 3-hydroxybutyryl-coa dehydrogenase | SAMN05421639_101639 | Not Available | Positive | 670634 - 671527 | 32156.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
