Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol peroxidase (atypical 2-cys peroxiredoxin) | SAMN05421639_101620 | Not Available | Positive | 654100 - 654660 | 20318.7 |
| hypothetical protein | SAMN05421639_101621 | Not Available | Positive | 654685 - 654840 | 5567.61 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN05421639_101622 | Not Available | Positive | 655190 - 655564 | 14731.4 |
| hypothetical protein | SAMN05421639_101623 | Not Available | Negative | 655879 - 656580 | 26275.5 |
| hypothetical protein | SAMN05421639_101624 | Not Available | Positive | 656905 - 657690 | 30306.1 |
| hypothetical protein | SAMN05421639_101625 | Not Available | Negative | 657776 - 658234 | 17561.0 |
| urocanate hydratase | SAMN05421639_101626 | Not Available | Negative | 658326 - 660311 | 74451.4 |
| very-short-patch-repair endonuclease | SAMN05421639_101627 | Not Available | Negative | 660981 - 661418 | 17256.1 |
| hypothetical protein | SAMN05421639_101628 | Not Available | Negative | 661576 - 661866 | 11162.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421639_101629 | Not Available | Negative | 661953 - 664316 | 88925.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
