Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421639_101600 | Not Available | Negative | 634239 - 634829 | 23181.7 |
| hypothetical protein | SAMN05421639_101601 | Not Available | Negative | 635088 - 636299 | 44828.5 |
| uncharacterized conserved protein phnb, glyoxalase superfamily | SAMN05421639_101602 | Not Available | Negative | 636401 - 636808 | 15900.8 |
| hypothetical protein | SAMN05421639_101603 | Not Available | Negative | 636858 - 637205 | 13082.6 |
| thiol peroxidase (atypical 2-cys peroxiredoxin) | SAMN05421639_101604 | Not Available | Negative | 637294 - 637791 | 17834.9 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_101605 | Not Available | Positive | 637953 - 638405 | 16615.2 |
| hypothetical protein | SAMN05421639_101606 | Not Available | Positive | 638420 - 639574 | 40556.4 |
| isocitrate dehydrogenase | SAMN05421639_101607 | Not Available | Positive | 639634 - 641853 | 80520.5 |
| glyoxylase, beta-lactamase superfamily ii | SAMN05421639_101608 | Not Available | Negative | 642064 - 643056 | 37639.7 |
| predicted oxidoreductase | SAMN05421639_101609 | Not Available | Negative | 643127 - 644128 | 37224.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
