Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase family s41 | SAMN05421639_101580 | Not Available | Positive | 615341 - 616801 | 55583.9 |
| 5-methylcytosine-specific restriction enzyme b | SAMN05421639_101581 | Not Available | Positive | 617015 - 617251 | 9075.2 |
| protein of unknown function | SAMN05421639_101582 | Not Available | Positive | 617284 - 618303 | 38883.1 |
| glycine dehydrogenase | SAMN05421639_101583 | Not Available | Negative | 619052 - 621910 | 105568.0 |
| dnaj domain-containing protein | SAMN05421639_101584 | Not Available | Negative | 622571 - 623218 | 25244.3 |
| hypothetical protein | SAMN05421639_101585 | Not Available | Negative | 623562 - 623819 | 9517.73 |
| hypothetical protein | SAMN05421639_101586 | Not Available | Negative | 623911 - 624255 | 13467.8 |
| rna polymerase sigma factor, sigma-70 family | SAMN05421639_101587 | Not Available | Negative | 624270 - 624848 | 22537.7 |
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN05421639_101588 | Not Available | Negative | 625201 - 627207 | 76453.8 |
| uncharacterized membrane protein | SAMN05421639_101589 | Not Available | Negative | 627456 - 627914 | 17143.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
