Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat-containing protein | SAMN05421639_101560 | Not Available | Negative | 594080 - 597043 | 112706.0 |
| hypothetical protein | SAMN05421639_101561 | Not Available | Positive | 597281 - 599521 | 85069.6 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN05421639_101562 | Not Available | Positive | 599636 - 601318 | 62402.9 |
| hypothetical protein | SAMN05421639_101563 | Not Available | Positive | 601459 - 601815 | 14004.0 |
| protein of unknown function | SAMN05421639_101564 | Not Available | Positive | 602115 - 602528 | 15221.5 |
| fur family transcriptional regulator, ferric uptake regulator | SAMN05421639_101565 | Not Available | Positive | 602709 - 603140 | 16359.9 |
| dgtpase | SAMN05421639_101566 | Not Available | Negative | 604104 - 605459 | 51474.2 |
| endonuclease-8 | SAMN05421639_101567 | Not Available | Positive | 605530 - 606264 | 28115.5 |
| methyltransferase domain-containing protein | SAMN05421639_101568 | Not Available | Positive | 606336 - 606959 | 23733.9 |
| ketosteroid isomerase homolog | SAMN05421639_101569 | Not Available | Positive | 606966 - 607364 | 15072.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
