Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted fe2+/mn2+ transporter, vit1/ccc1 family | SAMN05421639_101540 | Not Available | Negative | 559564 - 560259 | 24528.0 |
| hypothetical protein | SAMN05421639_101541 | Not Available | Positive | 561095 - 562300 | 44540.3 |
| hypothetical protein | SAMN05421639_101542 | Not Available | Positive | 562312 - 562617 | 11844.9 |
| transcriptional regulator, tetr family | SAMN05421639_101543 | Not Available | Negative | 562716 - 563345 | 23832.8 |
| catechol 2,3-dioxygenase | SAMN05421639_101544 | Not Available | Positive | 564115 - 564528 | 15551.6 |
| hypothetical protein | SAMN05421639_101545 | Not Available | Positive | 564873 - 567359 | 93962.6 |
| peptidase family s41 | SAMN05421639_101546 | Not Available | Negative | 567472 - 568500 | 38061.7 |
| hypothetical protein | SAMN05421639_101547 | Not Available | Positive | 569077 - 569436 | 14169.1 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN05421639_101548 | Not Available | Negative | 569877 - 570383 | 18883.9 |
| 6-phosphogluconolactonase | SAMN05421639_101549 | Not Available | Negative | 570637 - 571347 | 26996.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
