Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phytoene/squalene synthetase | SAMN05421639_101530 | Not Available | Negative | 549895 - 550731 | 32506.3 |
| phytoene desaturase | SAMN05421639_101531 | Not Available | Negative | 550734 - 552206 | 55883.1 |
| dna-binding transcriptional regulator, marr family | SAMN05421639_101532 | Not Available | Negative | 552209 - 552883 | 25610.7 |
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN05421639_101533 | Not Available | Negative | 553302 - 554786 | 56045.4 |
| gtp cyclohydrolase ii | SAMN05421639_101534 | Not Available | Negative | 554844 - 555434 | 22335.7 |
| hypothetical protein | SAMN05421639_101535 | Not Available | Positive | 555531 - 556190 | 26172.3 |
| predicted unusual protein kinase regulating ubiquinone biosynthesis, aarf/abc1/ubib family | SAMN05421639_101536 | Not Available | Positive | 556192 - 557511 | 51108.2 |
| tigr03643 family protein | SAMN05421639_101537 | Not Available | Positive | 557622 - 557918 | 11805.3 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421639_101538 | Not Available | Positive | 557987 - 558685 | 24955.2 |
| dna-binding transcriptional regulator, marr family | SAMN05421639_101539 | Not Available | Positive | 558732 - 559379 | 25649.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
