Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac-type dna-binding protein | SAMN05421639_101520 | Not Available | Positive | 540128 - 541042 | 35867.4 |
| drug resistance transporter, bcr/cfla subfamily | SAMN05421639_101521 | Not Available | Positive | 541133 - 542341 | 45264.0 |
| hypothetical protein | SAMN05421639_101522 | Not Available | Positive | 542496 - 542858 | 13976.5 |
| core-2/i-branching enzyme | SAMN05421639_101523 | Not Available | Positive | 543449 - 544411 | 37368.9 |
| carbonic anhydrase | SAMN05421639_101524 | Not Available | Positive | 544927 - 545670 | 27315.8 |
| ferrochelatase | SAMN05421639_101525 | Not Available | Negative | 545896 - 546924 | 39655.9 |
| deoxyribodipyrimidine photo-lyase | SAMN05421639_101526 | Not Available | Negative | 546976 - 548256 | 50321.8 |
| lycopene cyclase domain-containing protein | SAMN05421639_101527 | Not Available | Negative | 548243 - 548935 | 27417.2 |
| beta-carotene 3-hydroxylase | SAMN05421639_101528 | Not Available | Negative | 548938 - 549396 | 18462.8 |
| ligand-binding srpbcc domain-containing protein | SAMN05421639_101529 | Not Available | Negative | 549396 - 549863 | 18554.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
