Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101500 | Not Available | Negative | 510333 - 510548 | 7362.73 |
| gtp-binding protein | SAMN05421639_101501 | Not Available | Negative | 510831 - 512636 | 67320.1 |
| hypothetical protein | SAMN05421639_101502 | Not Available | Positive | 512851 - 514683 | 68436.3 |
| uncharacterized membrane protein ysda, duf1294 family | SAMN05421639_101503 | Not Available | Negative | 514718 - 514981 | 9914.74 |
| polyisoprenoid-binding protein ycei | SAMN05421639_101504 | Not Available | Negative | 515084 - 515761 | 23631.0 |
| crispr-associated protein cas2 | SAMN05421639_101505 | Not Available | Negative | 518362 - 518700 | 13270.2 |
| crisp-associated protein cas1 | SAMN05421639_101506 | Not Available | Negative | 518697 - 519590 | 34401.1 |
| crispr-associated endonuclease csn1 | SAMN05421639_101507 | Not Available | Negative | 519602 - 523834 | 164028.0 |
| uncharacterized protein | SAMN05421639_101508 | Not Available | Positive | 524054 - 526177 | 79467.7 |
| phosphoglycolate phosphatase | SAMN05421639_101509 | Not Available | Positive | 526219 - 526854 | 24285.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
