Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101480 | Not Available | Negative | 491202 - 491717 | 20218.9 |
| topoisomerase-4 subunit b | SAMN05421639_101481 | Not Available | Negative | 491750 - 493633 | 72130.0 |
| two component regulator propeller | SAMN05421639_101482 | Not Available | Positive | 493854 - 496712 | 109704.0 |
| two component transcriptional regulator, lyttr family | SAMN05421639_101483 | Not Available | Positive | 496681 - 497412 | 28116.9 |
| protein of unknown function | SAMN05421639_101484 | Not Available | Negative | 497444 - 498055 | 23661.8 |
| hypothetical protein | SAMN05421639_101485 | Not Available | Positive | 498288 - 499097 | 30740.4 |
| methionine aminotransferase | SAMN05421639_101486 | Not Available | Positive | 499210 - 500358 | 43676.1 |
| cardiolipin synthase | SAMN05421639_101487 | Not Available | Negative | 500362 - 501825 | 56114.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421639_101488 | Not Available | Negative | 501990 - 502754 | 26996.4 |
| arac-type dna-binding protein | SAMN05421639_101489 | Not Available | Negative | 502855 - 503853 | 38804.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
