Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 481104 - 481179 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 481216 - 481291 | Not Available |
| trna threonylcarbamoyl adenosine modification protein, sua5/ycio/yrdc/ywlc family | SAMN05421639_101472 | Not Available | Positive | 481393 - 482004 | 22570.4 |
| hypothetical protein | SAMN05421639_101473 | Not Available | Positive | 482039 - 482740 | 26643.8 |
| hypothetical protein | SAMN05421639_101474 | Not Available | Positive | 482745 - 483503 | 29504.6 |
| release factor glutamine methyltransferase | SAMN05421639_101475 | Not Available | Positive | 483504 - 484355 | 32225.4 |
| hypothetical protein | SAMN05421639_101476 | Not Available | Positive | 485538 - 486110 | 20753.7 |
| hypothetical protein | SAMN05421639_101477 | Not Available | Positive | 486118 - 487659 | 55757.3 |
| rhomboid family protein | SAMN05421639_101478 | Not Available | Negative | 487980 - 488633 | 23984.1 |
| topoisomerase-4 subunit a | SAMN05421639_101479 | Not Available | Negative | 488645 - 491233 | 98390.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
