Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted metalloprotease, contains c-terminal pdz domain | SAMN05421639_101450 | Not Available | Positive | 462372 - 464228 | 70330.7 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN05421639_101451 | Not Available | Negative | 464364 - 465533 | 44882.5 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN05421639_101452 | Not Available | Negative | 465541 - 466911 | 50000.2 |
| dipeptidase e | SAMN05421639_101453 | Not Available | Negative | 467077 - 467769 | 25839.8 |
| hypothetical protein | SAMN05421639_101454 | Not Available | Positive | 467962 - 468516 | 20213.6 |
| protein of unknown function | SAMN05421639_101455 | Not Available | Negative | 468580 - 469077 | 18871.0 |
| transaldolase | SAMN05421639_101456 | Not Available | Positive | 469306 - 469959 | 23694.8 |
| maltose o-acetyltransferase | SAMN05421639_101457 | Not Available | Negative | 470118 - 470675 | 20249.0 |
| glpgli family protein | SAMN05421639_101458 | Not Available | Negative | 470771 - 471676 | 34665.4 |
| blar1 peptidase m56 | SAMN05421639_101459 | Not Available | Negative | 471739 - 473703 | 74829.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
