Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dnaj domain-containing protein | SAMN05421639_101430 | Not Available | Positive | 433446 - 433892 | 17262.6 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN05421639_101431 | Not Available | Negative | 434210 - 437398 | 116546.0 |
| rnd family efflux transporter, mfp subunit | SAMN05421639_101432 | Not Available | Negative | 437405 - 438466 | 37829.5 |
| type i secretion outer membrane protein, tolc family | SAMN05421639_101433 | Not Available | Negative | 438476 - 439828 | 49917.7 |
| transcriptional regulator, tetr family | SAMN05421639_101434 | Not Available | Negative | 439923 - 440516 | 23020.8 |
| gliding motility-associated c-terminal domain-containing protein | SAMN05421639_101435 | Not Available | Positive | 440706 - 444623 | 142501.0 |
| hypothetical protein | SAMN05421639_101436 | Not Available | Negative | 444662 - 445486 | 31400.9 |
| n-hydroxyarylamine o-acetyltransferase | SAMN05421639_101437 | Not Available | Negative | 445665 - 446507 | 32118.5 |
| dihydrolipoamide dehydrogenase | SAMN05421639_101438 | Not Available | Negative | 446687 - 448090 | 50056.4 |
| hypothetical protein | SAMN05421639_101439 | Not Available | Negative | 448216 - 448542 | 12614.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
