Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101419 | Not Available | Positive | 424132 - 425049 | 34371.6 |
| nudix-type nucleoside diphosphatase, yffh/adpp family | SAMN05421639_101420 | Not Available | Positive | 425080 - 425661 | 21676.9 |
| predicted membrane protein | SAMN05421639_101421 | Not Available | Positive | 425794 - 426462 | 25709.2 |
| hypothetical protein | SAMN05421639_101422 | Not Available | Negative | 426421 - 426624 | 8028.18 |
| catechol 2,3-dioxygenase | SAMN05421639_101423 | Not Available | Positive | 426708 - 427088 | 14135.9 |
| hypothetical protein | SAMN05421639_101424 | Not Available | Positive | 427211 - 427975 | 29785.3 |
| lrp/asnc family transcriptional regulator, leucine-responsive regulatory protein | SAMN05421639_101425 | Not Available | Negative | 428054 - 428515 | 17614.3 |
| methionine synthase (b12-independent) | SAMN05421639_101427 | Not Available | Positive | 429077 - 431404 | 88995.2 |
| glpgli family protein | SAMN05421639_101428 | Not Available | Negative | 431583 - 432431 | 32498.8 |
| helix-turn-helix | SAMN05421639_101429 | Not Available | Negative | 432734 - 433111 | 14297.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
