Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ph domain-containing protein | SAMN05421639_101409 | Not Available | Negative | 416188 - 417033 | 31558.9 |
| protein of unknown function | SAMN05421639_101410 | Not Available | Negative | 417045 - 417968 | 34458.1 |
| ph domain-containing protein | SAMN05421639_101411 | Not Available | Negative | 418060 - 418566 | 19555.5 |
| short c-terminal domain-containing protein | SAMN05421639_101412 | Not Available | Negative | 418576 - 419112 | 20795.1 |
| histidyl-trna synthetase | SAMN05421639_101413 | Not Available | Negative | 419307 - 420656 | 50814.9 |
| hrdc domain-containing protein | SAMN05421639_101414 | Not Available | Negative | 421015 - 421470 | 17816.4 |
| single-strand binding protein | SAMN05421639_101415 | Not Available | Negative | 421485 - 421817 | 12350.8 |
| arginase | SAMN05421639_101416 | Not Available | Positive | 422249 - 423154 | 33945.3 |
| hpp family protein | SAMN05421639_101417 | Not Available | Positive | 423154 - 423756 | 22126.6 |
| hypothetical protein | SAMN05421639_101418 | Not Available | Positive | 423761 - 424105 | 13481.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
