Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-like | SAMN05421639_101379 | Not Available | Negative | 382881 - 383453 | 21704.0 |
| kdo2-lipid iv(a) lauroyltransferase | SAMN05421639_101380 | Not Available | Positive | 383534 - 384418 | 35289.7 |
| glycosyltransferase, gt2 family | SAMN05421639_101381 | Not Available | Positive | 384424 - 385401 | 37610.8 |
| dna polymerase-3 subunit epsilon | SAMN05421639_101382 | Not Available | Positive | 385685 - 386242 | 21296.5 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_101383 | Not Available | Positive | 386250 - 386972 | 26691.4 |
| apag protein | SAMN05421639_101384 | Not Available | Negative | 387151 - 387540 | 14661.7 |
| 2-oxoglutarate dehydrogenase e2 component | SAMN05421639_101385 | Not Available | Negative | 387621 - 388877 | 44297.3 |
| 2-oxoglutarate dehydrogenase e1 component | SAMN05421639_101386 | Not Available | Negative | 388918 - 391734 | 105734.0 |
| activator of hsp90 atpase homolog 1-like protein | SAMN05421639_101387 | Not Available | Negative | 391859 - 392899 | 40616.4 |
| outer membrane protein beta-barrel domain-containing protein | SAMN05421639_101388 | Not Available | Negative | 393049 - 393711 | 24106.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
