Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| h+/cl-antiporter clca | SAMN05421639_101368 | Not Available | Positive | 372768 - 374120 | 49404.8 |
| hypothetical protein | SAMN05421639_101369 | Not Available | Negative | 374258 - 374455 | 7907.62 |
| ssu ribosomal protein s6p | SAMN05421639_101370 | Not Available | Positive | 374464 - 374805 | 13026.9 |
| ssu ribosomal protein s18p | SAMN05421639_101371 | Not Available | Positive | 374838 - 375140 | 11484.0 |
| lsu ribosomal protein l9p | SAMN05421639_101372 | Not Available | Positive | 375310 - 375828 | 18441.2 |
| transcriptional regulator, arac family | SAMN05421639_101374 | Not Available | Negative | 376215 - 377018 | 31261.8 |
| outer membrane protein tolc | SAMN05421639_101375 | Not Available | Positive | 377162 - 378493 | 51407.9 |
| membrane fusion protein, multidrug efflux system | SAMN05421639_101376 | Not Available | Positive | 378499 - 379545 | 38838.6 |
| hypothetical protein | SAMN05421639_101377 | Not Available | Positive | 379879 - 381441 | 59438.5 |
| aldehyde dehydrogenase (nad+) | SAMN05421639_101378 | Not Available | Positive | 381485 - 382846 | 51542.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
