Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN05421639_101267 | Not Available | Negative | 271706 - 272515 | 29771.9 |
| uncharacterized conserved protein, duf1697 family | SAMN05421639_101268 | Not Available | Negative | 272875 - 273408 | 20081.0 |
| hypothetical protein | SAMN05421639_101269 | Not Available | Negative | 273507 - 274994 | 58899.0 |
| protein of unknown function | SAMN05421639_101270 | Not Available | Negative | 275087 - 278572 | 133276.0 |
| cystathionine beta-synthase | SAMN05421639_101271 | Not Available | Positive | 278795 - 279832 | 38263.7 |
| glycine c-acetyltransferase | SAMN05421639_101272 | Not Available | Positive | 279867 - 281171 | 48509.6 |
| eama domain-containing membrane protein rard | SAMN05421639_101273 | Not Available | Positive | 281242 - 282144 | 33353.3 |
| conserved hypothetical protein | SAMN05421639_101274 | Not Available | Negative | 282164 - 282667 | 19141.0 |
| hypothetical protein | SAMN05421639_101275 | Not Available | Negative | 282667 - 283317 | 23017.4 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421639_101276 | Not Available | Negative | 283448 - 284035 | 23294.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
