Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s1/p1 nuclease | SAMN05421639_101257 | Not Available | Positive | 260568 - 261413 | 32254.7 |
| rna polymerase primary sigma factor | SAMN05421639_101258 | Not Available | Positive | 261687 - 262553 | 32960.7 |
| hypothetical protein | SAMN05421639_101259 | Not Available | Positive | 262574 - 263059 | 19110.5 |
| hypothetical protein | SAMN05421639_101260 | Not Available | Positive | 263050 - 263703 | 24672.8 |
| acetyltransferase (gnat) family protein | SAMN05421639_101261 | Not Available | Positive | 263708 - 264205 | 18781.2 |
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN05421639_101262 | Not Available | Positive | 264225 - 265343 | 42066.0 |
| copper-resistance protein, copa family | SAMN05421639_101263 | Not Available | Negative | 265423 - 268200 | 105965.0 |
| protein of unknown function | SAMN05421639_101264 | Not Available | Negative | 268289 - 268762 | 17401.8 |
| hypothetical protein | SAMN05421639_101265 | Not Available | Negative | 268875 - 269333 | 17494.2 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421639_101266 | Not Available | Negative | 269457 - 271661 | 84229.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
