Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN05421639_101247 | Not Available | Positive | 251188 - 251766 | 22311.7 |
| protein of unknown function | SAMN05421639_101248 | Not Available | Positive | 251820 - 252377 | 21532.4 |
| hypothetical protein | SAMN05421639_101249 | Not Available | Positive | 253073 - 253573 | 18089.5 |
| hypothetical protein | SAMN05421639_101250 | Not Available | Positive | 253615 - 253992 | 14414.9 |
| l-threonine aldolase | SAMN05421639_101251 | Not Available | Negative | 254063 - 255097 | 38599.4 |
| iron (metal) dependent repressor, dtxr family | SAMN05421639_101252 | Not Available | Positive | 255183 - 255836 | 25021.4 |
| selenocysteine lyase/cysteine desulfurase | SAMN05421639_101253 | Not Available | Negative | 255914 - 257080 | 43446.7 |
| hypothetical protein | SAMN05421639_101254 | Not Available | Negative | 257181 - 258320 | 43161.4 |
| hypothetical protein | SAMN05421639_101255 | Not Available | Negative | 258347 - 259249 | 35107.4 |
| type vi secretion, vasb, imph, vc_a0111 | SAMN05421639_101256 | Not Available | Negative | 259304 - 260245 | 36654.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
