Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna helicase-2 / atp-dependent dna helicase pcra | SAMN05421639_102748 | Not Available | Negative | 2039848 - 2042178 | 88753.1 |
| predicted zn-dependent peptidase | SAMN05421639_102749 | Not Available | Positive | 2042583 - 2043875 | 49038.0 |
| predicted zn-dependent peptidase | SAMN05421639_102750 | Not Available | Positive | 2043929 - 2045974 | 74252.6 |
| preprotein translocase subunit secg | SAMN05421639_102751 | Not Available | Positive | 2046106 - 2046462 | 12124.2 |
| glycosyltransferase, gt2 family | SAMN05421639_102752 | Not Available | Negative | 2046515 - 2047348 | 32086.4 |
| dna replication and repair protein recr | SAMN05421639_102753 | Not Available | Negative | 2047350 - 2047961 | 22454.0 |
| hypothetical protein | SAMN05421639_102754 | Not Available | Positive | 2048417 - 2049022 | 23513.4 |
| hypothetical protein | SAMN05421639_102755 | Not Available | Positive | 2049042 - 2049533 | 18208.9 |
| dipeptidase d | SAMN05421639_102756 | Not Available | Positive | 2049643 - 2051085 | 51951.1 |
| hypothetical protein | SAMN05421639_102757 | Not Available | Positive | 2051288 - 2051869 | 21356.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
