Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolyl oligopeptidase family protein | SAMN05421639_102737 | Not Available | Negative | 2028021 - 2028863 | 32402.2 |
| hypothetical protein | SAMN05421639_102738 | Not Available | Positive | 2029045 - 2029818 | 29494.4 |
| protein of unknown function | SAMN05421639_102739 | Not Available | Positive | 2029805 - 2030188 | 14969.2 |
| acetyl esterase/lipase | SAMN05421639_102740 | Not Available | Positive | 2030212 - 2031240 | 38375.1 |
| carbon starvation protein | SAMN05421639_102741 | Not Available | Positive | 2031452 - 2033293 | 66538.3 |
| hydroxyethylthiazole kinase | SAMN05421639_102743 | Not Available | Positive | 2033510 - 2034307 | 28508.7 |
| thiamine-phosphate diphosphorylase | SAMN05421639_102744 | Not Available | Positive | 2034304 - 2034939 | 23137.7 |
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | SAMN05421639_102745 | Not Available | Positive | 2034936 - 2035769 | 29959.0 |
| thiaminase /4-amino-5-aminomethyl-2-methylpyrimidine deaminase | SAMN05421639_102746 | Not Available | Positive | 2035756 - 2036406 | 25307.9 |
| iron complex outermembrane recepter protein | SAMN05421639_102747 | Not Available | Negative | 2036825 - 2039551 | 99449.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
