Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor for ferrienterochelin and colicins | SAMN05421639_102727 | Not Available | Negative | 2017168 - 2019237 | 78164.3 |
| homogentisate 1,2-dioxygenase | SAMN05421639_102728 | Not Available | Positive | 2019359 - 2020546 | 45953.7 |
| acyl-coa hydrolase | SAMN05421639_102729 | Not Available | Positive | 2020573 - 2021847 | 47283.8 |
| hypothetical protein | SAMN05421639_102730 | Not Available | Positive | 2021986 - 2022780 | 31613.4 |
| 4-hydroxyphenylpyruvate dioxygenase | SAMN05421639_102731 | Not Available | Positive | 2023013 - 2024143 | 42701.4 |
| hypothetical protein | SAMN05421639_102732 | Not Available | Positive | 2024213 - 2024671 | 17544.1 |
| fumarylacetoacetate hydrolase | SAMN05421639_102733 | Not Available | Positive | 2024751 - 2025998 | 46717.0 |
| gxxexxy protein | SAMN05421639_102734 | Not Available | Positive | 2026032 - 2026439 | 15875.5 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN05421639_102735 | Not Available | Positive | 2026501 - 2027325 | 30376.7 |
| hypothetical protein | SAMN05421639_102736 | Not Available | Negative | 2027446 - 2027955 | 18227.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
