Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative intracellular protease/amidase | SAMN05421639_102717 | Not Available | Positive | 2010179 - 2010931 | 27776.1 |
| predicted oxidoreductase | SAMN05421639_102718 | Not Available | Positive | 2011169 - 2012152 | 36430.4 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN05421639_102719 | Not Available | Negative | 2012264 - 2012707 | 16687.3 |
| doxx protein | SAMN05421639_102720 | Not Available | Negative | 2012712 - 2013164 | 16833.8 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421639_102721 | Not Available | Negative | 2013207 - 2013779 | 22994.8 |
| putative membrane protein | SAMN05421639_102722 | Not Available | Positive | 2013846 - 2014235 | 14335.1 |
| transcriptional regulator, hxlr family | SAMN05421639_102723 | Not Available | Negative | 2014497 - 2014904 | 15541.2 |
| nadph:quinone reductase | SAMN05421639_102724 | Not Available | Positive | 2014966 - 2015955 | 36060.3 |
| cupin domain-containing protein | SAMN05421639_102725 | Not Available | Positive | 2015959 - 2016429 | 17596.2 |
| thioredoxin-like | SAMN05421639_102726 | Not Available | Negative | 2016710 - 2017171 | 17718.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
