Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN05421639_102697 | Not Available | Positive | 1989223 - 1990029 | 30560.2 |
| hypothetical protein | SAMN05421639_102698 | Not Available | Positive | 1990043 - 1990483 | 16589.7 |
| udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligase | SAMN05421639_102699 | Not Available | Positive | 1990486 - 1991823 | 50617.7 |
| hypothetical protein | SAMN05421639_102700 | Not Available | Negative | 1991874 - 1992203 | 13260.9 |
| hypothetical protein | SAMN05421639_102701 | Not Available | Negative | 1992240 - 1992677 | 17365.4 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102702 | Not Available | Negative | 1992817 - 1996956 | 151293.0 |
| hypothetical protein | SAMN05421639_102703 | Not Available | Negative | 1997076 - 1998434 | 47053.3 |
| hypothetical protein | SAMN05421639_102704 | Not Available | Negative | 1998649 - 1999176 | 19576.1 |
| regulatory protein, luxr family | SAMN05421639_102705 | Not Available | Negative | 1999650 - 2000657 | 39607.1 |
| nitronate monooxygenase | SAMN05421639_102706 | Not Available | Negative | 2001006 - 2002061 | 38914.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
