Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| delta-60 repeat domain-containing protein/por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102687 | Not Available | Positive | 1979538 - 1980971 | 52478.0 |
| organic hydroperoxide reductase osmc/ohra | SAMN05421639_102688 | Not Available | Positive | 1981064 - 1981534 | 17384.4 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN05421639_102689 | Not Available | Positive | 1981759 - 1982409 | 25049.8 |
| carboxypepd_reg-like domain-containing protein | SAMN05421639_102690 | Not Available | Negative | 1982760 - 1984271 | 55150.4 |
| curli production assembly/transport component csgg | SAMN05421639_102691 | Not Available | Negative | 1984283 - 1985647 | 51354.5 |
| curli production assembly/transport component csgf | SAMN05421639_102692 | Not Available | Negative | 1985673 - 1986083 | 15128.9 |
| curli assembly protein csge | SAMN05421639_102693 | Not Available | Negative | 1986095 - 1986826 | 27908.7 |
| hypothetical protein | SAMN05421639_102694 | Not Available | Negative | 1986837 - 1987235 | 14757.5 |
| curlin associated repeat-containing protein | SAMN05421639_102695 | Not Available | Negative | 1987398 - 1988216 | 28958.1 |
| nudix domain-containing protein | SAMN05421639_102696 | Not Available | Positive | 1988566 - 1989195 | 23969.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
