Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_102667 | Not Available | Negative | 1958257 - 1958988 | 28111.5 |
| hypothetical protein | SAMN05421639_102668 | Not Available | Negative | 1959051 - 1959479 | 16270.6 |
| hypothetical protein | SAMN05421639_102669 | Not Available | Negative | 1959476 - 1959982 | 19883.9 |
| protein of unknown function | SAMN05421639_102670 | Not Available | Negative | 1959990 - 1961255 | 44328.8 |
| hypothetical protein | SAMN05421639_102671 | Not Available | Negative | 1961248 - 1962249 | 38753.2 |
| uncharacterized conserved protein, implicated in type vi secretion and phage assembly | SAMN05421639_102672 | Not Available | Negative | 1962249 - 1963985 | 62101.8 |
| hypothetical protein | SAMN05421639_102673 | Not Available | Negative | 1963954 - 1964418 | 16836.3 |
| hypothetical protein | SAMN05421639_102674 | Not Available | Negative | 1964638 - 1965048 | 14933.5 |
| membrane-bound lytic murein transglycosylase d | SAMN05421639_102675 | Not Available | Negative | 1965414 - 1966283 | 32082.4 |
| atp-dependent clp protease atp-binding subunit clpa | SAMN05421639_102676 | Not Available | Negative | 1966371 - 1968866 | 93267.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
