Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 1907185 - 1907258 | Not Available |
| sh3 domain-containing protein | SAMN05421639_102628 | Not Available | Negative | 1907953 - 1908813 | 32708.7 |
| ribosomal protein l11 methyltransferase | SAMN05421639_102629 | Not Available | Negative | 1908813 - 1909640 | 31529.7 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN05421639_102630 | Not Available | Negative | 1909934 - 1910647 | 25176.1 |
| glycerophosphoryl diester phosphodiesterase | SAMN05421639_102631 | Not Available | Negative | 1910914 - 1911615 | 26582.0 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN05421639_102632 | Not Available | Negative | 1911723 - 1914809 | 114172.0 |
| dna ligase (nad+) | SAMN05421639_102633 | Not Available | Positive | 1915048 - 1917054 | 76110.9 |
| conserved repeat domain-containing protein/por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102634 | Not Available | Positive | 1917149 - 1919734 | 94509.9 |
| conserved repeat domain-containing protein/por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102635 | Not Available | Positive | 1919942 - 1922560 | 95323.6 |
| hypothetical protein | SAMN05421639_102636 | Not Available | Negative | 1922621 - 1923025 | 15165.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
