Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptidase i | SAMN05421639_102607 | Not Available | Negative | 1884820 - 1886466 | 63425.6 |
| dihydrodipicolinate reductase | SAMN05421639_102608 | Not Available | Negative | 1886570 - 1887304 | 27427.7 |
| hypothetical protein | SAMN05421639_102609 | Not Available | Negative | 1887337 - 1887999 | 24595.5 |
| chromosome partitioning protein, parb family | SAMN05421639_102610 | Not Available | Negative | 1887999 - 1888868 | 32170.7 |
| chromosome partitioning protein | SAMN05421639_102611 | Not Available | Negative | 1888959 - 1889732 | 28173.9 |
| protein tonb | SAMN05421639_102612 | Not Available | Negative | 1889899 - 1890744 | 30665.7 |
| methyltransferase, fkbm family | SAMN05421639_102613 | Not Available | Positive | 1891183 - 1892001 | 32150.6 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN05421639_102614 | Not Available | Positive | 1892011 - 1893510 | 57120.4 |
| hypothetical protein | SAMN05421639_102615 | Not Available | Negative | 1893503 - 1894549 | 40844.4 |
| glycosyl transferase family 2 | SAMN05421639_102616 | Not Available | Negative | 1894642 - 1895496 | 32792.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
