Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac-type dna-binding protein | SAMN05421639_102587 | Not Available | Positive | 1868884 - 1869735 | 32912.5 |
| short-chain dehydrogenase | SAMN05421639_102588 | Not Available | Positive | 1869854 - 1870654 | 29431.1 |
| n-ethylmaleimide reductase | SAMN05421639_102589 | Not Available | Positive | 1870881 - 1871750 | 31670.1 |
| hypothetical protein | SAMN05421639_102590 | Not Available | Negative | 1872023 - 1872382 | 13968.8 |
| site-specific recombinase xerd | SAMN05421639_102591 | Not Available | Negative | 1873166 - 1874416 | 48578.9 |
| Trna-asp | Not Available | Not Available | Positive | 1874799 - 1874875 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 1874909 - 1874982 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 1875019 - 1875092 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 1875124 - 1875200 | Not Available |
| thioredoxin | SAMN05421639_102596 | Not Available | Negative | 1875333 - 1875650 | 11546.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
