Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN05421639_102567 | Not Available | Negative | 1846297 - 1849308 | 111086.0 |
| hypothetical protein | SAMN05421639_102568 | Not Available | Positive | 1850001 - 1850252 | 9259.95 |
| nad(p)h dehydrogenase (quinone) | SAMN05421639_102569 | Not Available | Negative | 1850690 - 1851421 | 27228.3 |
| glucose 1-dehydrogenase | SAMN05421639_102570 | Not Available | Negative | 1851613 - 1852377 | 27350.7 |
| arac-type dna-binding protein | SAMN05421639_102571 | Not Available | Positive | 1852615 - 1853505 | 34822.3 |
| short-chain dehydrogenase | SAMN05421639_102572 | Not Available | Positive | 1853810 - 1854646 | 30618.5 |
| mfs transporter, dha1 family, arabinose polymer transporter | SAMN05421639_102573 | Not Available | Positive | 1854799 - 1855977 | 42255.8 |
| arac-type dna-binding protein | SAMN05421639_102574 | Not Available | Positive | 1856003 - 1856869 | 33360.7 |
| alcohol dehydrogenase (nadp+)/uncharacterized zinc-type alcohol dehydrogenase-like protein | SAMN05421639_102575 | Not Available | Positive | 1856958 - 1858133 | 42178.7 |
| short-chain dehydrogenase | SAMN05421639_102576 | Not Available | Positive | 1858164 - 1858958 | 29505.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
