Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosyl-trna synthetase | SAMN05421639_102477 | Not Available | Positive | 1750861 - 1752156 | 48622.7 |
| hypothetical protein | SAMN05421639_102478 | Not Available | Negative | 1752232 - 1752648 | 14429.9 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN05421639_102479 | Not Available | Positive | 1752848 - 1754821 | 76005.6 |
| two component transcriptional regulator, luxr family | SAMN05421639_102480 | Not Available | Positive | 1754811 - 1755455 | 23929.2 |
| hypothetical protein | SAMN05421639_102481 | Not Available | Negative | 1755505 - 1755927 | 15477.6 |
| phospholipase/carboxylesterase | SAMN05421639_102482 | Not Available | Positive | 1756154 - 1756792 | 24518.2 |
| aspartyl protease | SAMN05421639_102483 | Not Available | Positive | 1756915 - 1758237 | 50719.4 |
| hypothetical protein | SAMN05421639_102484 | Not Available | Positive | 1758241 - 1758768 | 20961.3 |
| l,d-transpeptidase catalytic domain | SAMN05421639_102485 | Not Available | Negative | 1758761 - 1759786 | 38278.0 |
| regulatory protein, luxr family | SAMN05421639_102486 | Not Available | Negative | 1759900 - 1760658 | 29327.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
