Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_102457 | Not Available | Positive | 1724507 - 1725553 | 40989.4 |
| putative endopeptidase | SAMN05421639_102458 | Not Available | Negative | 1725618 - 1727714 | 78145.3 |
| putative endopeptidase | SAMN05421639_102459 | Not Available | Negative | 1728052 - 1730151 | 78553.5 |
| poly-beta-1,6 n-acetyl-d-glucosamine synthase | SAMN05421639_102460 | Not Available | Negative | 1730187 - 1733585 | 129075.0 |
| nicotinamide-nucleotide amidase | SAMN05421639_102461 | Not Available | Negative | 1733673 - 1734923 | 46301.9 |
| hypothetical protein | SAMN05421639_102462 | Not Available | Positive | 1735041 - 1735514 | 18246.5 |
| apolipoprotein d and lipocalin family protein | SAMN05421639_102463 | Not Available | Negative | 1735750 - 1736289 | 20516.6 |
| two component transcriptional regulator, lyttr family | SAMN05421639_102464 | Not Available | Negative | 1736362 - 1737096 | 28051.1 |
| hypothetical protein | SAMN05421639_102465 | Not Available | Negative | 1737154 - 1737873 | 27047.3 |
| histidine kinase | SAMN05421639_102466 | Not Available | Negative | 1737884 - 1739776 | 71992.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
