Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrophobe/amphiphile efflux-1 (hae1) family protein | SAMN05421639_102437 | Not Available | Negative | 1701743 - 1704865 | 113943.0 |
| membrane fusion protein, multidrug efflux system | SAMN05421639_102438 | Not Available | Negative | 1704893 - 1705981 | 40566.2 |
| hypothetical protein | SAMN05421639_102439 | Not Available | Negative | 1706041 - 1706373 | 12443.2 |
| l,d-transpeptidase catalytic domain | SAMN05421639_102440 | Not Available | Negative | 1706597 - 1707244 | 24145.3 |
| conserved hypothetical protein | SAMN05421639_102441 | Not Available | Negative | 1707250 - 1707933 | 25675.8 |
| hypothetical protein | SAMN05421639_102442 | Not Available | Positive | 1707991 - 1708104 | 4612.93 |
| epoxyqueuosine reductase | SAMN05421639_102443 | Not Available | Negative | 1708285 - 1709238 | 36695.7 |
| rhodanese-related sulfurtransferase | SAMN05421639_102444 | Not Available | Positive | 1709372 - 1709671 | 10875.9 |
| predicted metal-dependent phosphohydrolase, hd superfamily | SAMN05421639_102445 | Not Available | Positive | 1709694 - 1710314 | 24369.9 |
| ricin-type beta-trefoil lectin domain-like | SAMN05421639_102446 | Not Available | Negative | 1711334 - 1713886 | 97988.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
