Chryseobacterium shigense

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Chryseobacterium

Description

Chryseobacterium shigense is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolism and thrives at an optimal temperature of 25°C. As a member of the genus Chryseobacterium, this microbe is characterized by its distinct cellular morphology and respiratory requirements, which contribute to its ecological niche. The Gram-negative nature of C. shigense indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may impart specific advantages in terms of environmental resilience and interaction with other microbial entities. The rod shape of the organism is consistent with many members of this genus, facilitating motility and colonization in various environments. The preference for aerobic conditions suggests that C. shigense may play a role in nutrient cycling in oxygen-rich habitats, possibly contributing to the degradation of organic matter. Its optimal growth temperature of 25°C aligns with many environmental microbes, indicating a potential adaptation to temperate climates or habitats where such temperatures prevail. Given its physiological traits, Chryseobacterium shigense may be an important player in the microbial communities of soil or aquatic environments, where it could engage in competitive interactions with other microorganisms or participate in biogeochemical processes. Understanding the ecological role of C. shigense could provide insights into the dynamics of microbial communities and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium shigense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
Habitatfresh lactic acid beverage
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium shigense strain DSM 17126 genome assembly,

Gene Summary

Adenine Count

1524130 bp

Thymine Count

1537963 bp

Guanine Count

900959 bp

Cytosine Count

932865 bp

Genome Length

4895917 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrophobe/amphiphile efflux-1 (hae1) family proteinSAMN05421639_102437Not AvailableNegative1701743 - 1704865113943.0
membrane fusion protein, multidrug efflux systemSAMN05421639_102438Not AvailableNegative1704893 - 170598140566.2
hypothetical proteinSAMN05421639_102439Not AvailableNegative1706041 - 170637312443.2
l,d-transpeptidase catalytic domainSAMN05421639_102440Not AvailableNegative1706597 - 170724424145.3
conserved hypothetical proteinSAMN05421639_102441Not AvailableNegative1707250 - 170793325675.8
hypothetical proteinSAMN05421639_102442Not AvailablePositive1707991 - 17081044612.93
epoxyqueuosine reductaseSAMN05421639_102443Not AvailableNegative1708285 - 170923836695.7
rhodanese-related sulfurtransferaseSAMN05421639_102444Not AvailablePositive1709372 - 170967110875.9
predicted metal-dependent phosphohydrolase, hd superfamilySAMN05421639_102445Not AvailablePositive1709694 - 171031424369.9
ricin-type beta-trefoil lectin domain-likeSAMN05421639_102446Not AvailableNegative1711334 - 171388697988.5

Displaying genes 1561 – 1570 of 4498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.