Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| core-2/i-branching enzyme | SAMN05421639_102427 | Not Available | Negative | 1691380 - 1692327 | 37604.0 |
| atp-dependent rna helicase rhle | SAMN05421639_102428 | Not Available | Positive | 1692851 - 1693975 | 41995.4 |
| cold shock protein (beta-ribbon, cspa family) | SAMN05421639_102429 | Not Available | Positive | 1694066 - 1694260 | 6975.24 |
| prolipoprotein diacylglyceryl transferase | SAMN05421639_102430 | Not Available | Positive | 1694749 - 1695585 | 31593.2 |
| two component transcriptional regulator, lyttr family | SAMN05421639_102431 | Not Available | Negative | 1695932 - 1696633 | 26806.8 |
| histidine kinase | SAMN05421639_102432 | Not Available | Negative | 1696614 - 1697687 | 41922.4 |
| putative oxidoreductase | SAMN05421639_102433 | Not Available | Negative | 1697767 - 1698162 | 14883.6 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421639_102434 | Not Available | Negative | 1698315 - 1699070 | 26727.6 |
| cold shock protein, cspa family | SAMN05421639_102435 | Not Available | Positive | 1699780 - 1700208 | 16344.3 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN05421639_102436 | Not Available | Negative | 1700314 - 1701762 | 54222.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
