Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_102407 | Not Available | Positive | 1672991 - 1673164 | 6450.12 |
| magnesium transporter | SAMN05421639_102408 | Not Available | Positive | 1673311 - 1674657 | 50363.3 |
| abc-type fe3+-hydroxamate transport system, substrate-binding protein | SAMN05421639_102409 | Not Available | Positive | 1674680 - 1675417 | 28423.5 |
| gaf domain-containing protein | SAMN05421639_102410 | Not Available | Negative | 1675712 - 1676161 | 16875.9 |
| hypothetical protein | SAMN05421639_102411 | Not Available | Negative | 1676175 - 1677602 | 54788.3 |
| phosphoribosyl 1,2-cyclic phosphate phosphodiesterase | SAMN05421639_102412 | Not Available | Positive | 1677657 - 1678424 | 29316.5 |
| Trna-leu | Not Available | Not Available | Positive | 1678493 - 1678577 | Not Available |
| hypothetical protein | SAMN05421639_102414 | Not Available | Negative | 1678741 - 1678938 | 6878.11 |
| fructokinase | SAMN05421639_102415 | Not Available | Negative | 1679481 - 1680404 | 34768.2 |
| hypothetical protein | SAMN05421639_102416 | Not Available | Negative | 1680556 - 1681290 | 28238.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
