Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative transcriptional regulator | SAMN05421639_102397 | Not Available | Positive | 1661522 - 1661725 | 7499.5 |
| abc-type multidrug transport system, atpase component | SAMN05421639_102398 | Not Available | Positive | 1662016 - 1662888 | 32443.3 |
| abc-2 family transporter protein | SAMN05421639_102399 | Not Available | Positive | 1662891 - 1666058 | 120021.0 |
| polyribonucleotide nucleotidyltransferase | SAMN05421639_102400 | Not Available | Negative | 1666360 - 1668621 | 83526.3 |
| mfs transporter, fhs family, l-fucose permease | SAMN05421639_102401 | Not Available | Positive | 1669072 - 1670493 | 51858.5 |
| protein of unknown function | SAMN05421639_102402 | Not Available | Positive | 1670708 - 1671067 | 13689.7 |
| ssu ribosomal protein s15p | SAMN05421639_102403 | Not Available | Negative | 1671124 - 1671393 | 10246.4 |
| hypothetical protein | SAMN05421639_102404 | Not Available | Positive | 1671521 - 1672120 | 22542.4 |
| hypothetical protein | SAMN05421639_102405 | Not Available | Positive | 1672666 - 1672809 | 5249.41 |
| hypothetical protein | SAMN05421639_102406 | Not Available | Positive | 1672839 - 1672979 | 5189.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
