Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421639_102377 | Not Available | Positive | 1645322 - 1646701 | 53322.9 |
| uncharacterized conserved protein, duf1501 family | SAMN05421639_102378 | Not Available | Positive | 1646801 - 1647985 | 44872.0 |
| hypothetical protein | SAMN05421639_102379 | Not Available | Negative | 1647978 - 1648097 | 4296.32 |
| hypothetical protein | SAMN05421639_102380 | Not Available | Negative | 1648117 - 1649868 | 66162.2 |
| Trna-ser | Not Available | Not Available | Positive | 1650053 - 1650156 | Not Available |
| rna-splicing ligase rtcb, repairs trna damage | SAMN05421639_102382 | Not Available | Negative | 1650235 - 1651617 | 51911.6 |
| hopj type iii effector protein | SAMN05421639_102383 | Not Available | Positive | 1651757 - 1652092 | 12832.1 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05421639_102384 | Not Available | Positive | 1652224 - 1653243 | 39708.5 |
| hypothetical protein | SAMN05421639_102385 | Not Available | Positive | 1653565 - 1653702 | 5055.42 |
| alpha-ribazole phosphatase | SAMN05421639_102386 | Not Available | Negative | 1653785 - 1654339 | 21451.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
