Chryseobacterium shigense

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Chryseobacterium

Description

Chryseobacterium shigense is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolism and thrives at an optimal temperature of 25°C. As a member of the genus Chryseobacterium, this microbe is characterized by its distinct cellular morphology and respiratory requirements, which contribute to its ecological niche. The Gram-negative nature of C. shigense indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may impart specific advantages in terms of environmental resilience and interaction with other microbial entities. The rod shape of the organism is consistent with many members of this genus, facilitating motility and colonization in various environments. The preference for aerobic conditions suggests that C. shigense may play a role in nutrient cycling in oxygen-rich habitats, possibly contributing to the degradation of organic matter. Its optimal growth temperature of 25°C aligns with many environmental microbes, indicating a potential adaptation to temperate climates or habitats where such temperatures prevail. Given its physiological traits, Chryseobacterium shigense may be an important player in the microbial communities of soil or aquatic environments, where it could engage in competitive interactions with other microorganisms or participate in biogeochemical processes. Understanding the ecological role of C. shigense could provide insights into the dynamics of microbial communities and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium shigense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
Habitatfresh lactic acid beverage
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium shigense strain DSM 17126 genome assembly,

Gene Summary

Adenine Count

1524130 bp

Thymine Count

1537963 bp

Guanine Count

900959 bp

Cytosine Count

932865 bp

Genome Length

4895917 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of unknown functionSAMN05421639_102377Not AvailablePositive1645322 - 164670153322.9
uncharacterized conserved protein, duf1501 familySAMN05421639_102378Not AvailablePositive1646801 - 164798544872.0
hypothetical proteinSAMN05421639_102379Not AvailableNegative1647978 - 16480974296.32
hypothetical proteinSAMN05421639_102380Not AvailableNegative1648117 - 164986866162.2
Trna-serNot AvailableNot AvailablePositive1650053 - 1650156Not Available
rna-splicing ligase rtcb, repairs trna damageSAMN05421639_102382Not AvailableNegative1650235 - 165161751911.6
hopj type iii effector proteinSAMN05421639_102383Not AvailablePositive1651757 - 165209212832.1
predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domainsSAMN05421639_102384Not AvailablePositive1652224 - 165324339708.5
hypothetical proteinSAMN05421639_102385Not AvailablePositive1653565 - 16537025055.42
alpha-ribazole phosphataseSAMN05421639_102386Not AvailableNegative1653785 - 165433921451.7

Displaying genes 1501 – 1510 of 4498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.