Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligopeptidase b | SAMN05421639_102347 | Not Available | Positive | 1614760 - 1616886 | 81186.5 |
| triosephosphate isomerase | SAMN05421639_102348 | Not Available | Positive | 1617275 - 1618036 | 27995.3 |
| uncharacterized conserved protein | SAMN05421639_102349 | Not Available | Negative | 1618135 - 1619400 | 45230.8 |
| hypothetical protein | SAMN05421639_102350 | Not Available | Positive | 1619588 - 1619734 | 5587.01 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102351 | Not Available | Positive | 1620176 - 1621300 | 41648.6 |
| atp-dependent clp protease, protease subunit | SAMN05421639_102352 | Not Available | Negative | 1621621 - 1622307 | 25462.8 |
| dna primase | SAMN05421639_102353 | Not Available | Negative | 1622427 - 1624409 | 76165.7 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | SAMN05421639_102354 | Not Available | Positive | 1624658 - 1625065 | 15832.8 |
| alanine dehydrogenase | SAMN05421639_102355 | Not Available | Positive | 1625136 - 1626329 | 44240.0 |
| hypothetical protein | SAMN05421639_102356 | Not Available | Positive | 1626329 - 1626700 | 14105.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
