Chryseobacterium shigense

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Chryseobacterium

Description

Chryseobacterium shigense is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolism and thrives at an optimal temperature of 25°C. As a member of the genus Chryseobacterium, this microbe is characterized by its distinct cellular morphology and respiratory requirements, which contribute to its ecological niche. The Gram-negative nature of C. shigense indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may impart specific advantages in terms of environmental resilience and interaction with other microbial entities. The rod shape of the organism is consistent with many members of this genus, facilitating motility and colonization in various environments. The preference for aerobic conditions suggests that C. shigense may play a role in nutrient cycling in oxygen-rich habitats, possibly contributing to the degradation of organic matter. Its optimal growth temperature of 25°C aligns with many environmental microbes, indicating a potential adaptation to temperate climates or habitats where such temperatures prevail. Given its physiological traits, Chryseobacterium shigense may be an important player in the microbial communities of soil or aquatic environments, where it could engage in competitive interactions with other microorganisms or participate in biogeochemical processes. Understanding the ecological role of C. shigense could provide insights into the dynamics of microbial communities and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium shigense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
Habitatfresh lactic acid beverage
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium shigense strain DSM 17126 genome assembly,

Gene Summary

Adenine Count

1524130 bp

Thymine Count

1537963 bp

Guanine Count

900959 bp

Cytosine Count

932865 bp

Genome Length

4895917 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oligopeptidase bSAMN05421639_102347Not AvailablePositive1614760 - 161688681186.5
triosephosphate isomeraseSAMN05421639_102348Not AvailablePositive1617275 - 161803627995.3
uncharacterized conserved proteinSAMN05421639_102349Not AvailableNegative1618135 - 161940045230.8
hypothetical proteinSAMN05421639_102350Not AvailablePositive1619588 - 16197345587.01
por secretion system c-terminal sorting domain-containing proteinSAMN05421639_102351Not AvailablePositive1620176 - 162130041648.6
atp-dependent clp protease, protease subunitSAMN05421639_102352Not AvailableNegative1621621 - 162230725462.8
dna primaseSAMN05421639_102353Not AvailableNegative1622427 - 162440976165.7
trna threonylcarbamoyladenosine biosynthesis protein tsaeSAMN05421639_102354Not AvailablePositive1624658 - 162506515832.8
alanine dehydrogenaseSAMN05421639_102355Not AvailablePositive1625136 - 162632944240.0
hypothetical proteinSAMN05421639_102356Not AvailablePositive1626329 - 162670014105.2

Displaying genes 1471 – 1480 of 4498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.