Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonine ammonia-lyase | SAMN05421639_102337 | Not Available | Negative | 1603918 - 1605177 | 46010.8 |
| ketol-acid reductoisomerase | SAMN05421639_102338 | Not Available | Negative | 1605193 - 1606239 | 38701.7 |
| acetolactate synthase-1/3 small subunit | SAMN05421639_102339 | Not Available | Negative | 1606287 - 1606568 | 10908.3 |
| acetolactate synthase, large subunit | SAMN05421639_102340 | Not Available | Negative | 1606587 - 1608311 | 63336.5 |
| dihydroxyacid dehydratase | SAMN05421639_102341 | Not Available | Negative | 1608323 - 1610014 | 60328.8 |
| branched-chain amino acid aminotransferase | SAMN05421639_102342 | Not Available | Negative | 1610215 - 1611087 | 32760.8 |
| dihydropteroate synthase | SAMN05421639_102343 | Not Available | Negative | 1611425 - 1612204 | 29248.2 |
| protein of unknown function | SAMN05421639_102344 | Not Available | Positive | 1612587 - 1613150 | 21779.9 |
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN05421639_102345 | Not Available | Positive | 1613157 - 1614269 | 42276.2 |
| hypothetical protein | SAMN05421639_102346 | Not Available | Positive | 1614383 - 1614733 | 13666.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
