Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide methionine sulfoxide reductase msra/msrb | SAMN05421639_102327 | Not Available | Negative | 1589576 - 1590673 | 41244.9 |
| uncharacterized membrane protein ykgb | SAMN05421639_102328 | Not Available | Negative | 1590691 - 1591140 | 16373.6 |
| hypothetical protein | SAMN05421639_102329 | Not Available | Negative | 1591221 - 1591436 | 8518.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421639_102330 | Not Available | Negative | 1591507 - 1592061 | 21699.7 |
| alanyl-trna synthetase | SAMN05421639_102331 | Not Available | Positive | 1592768 - 1595371 | 97042.1 |
| hypothetical protein | SAMN05421639_102332 | Not Available | Positive | 1595568 - 1597049 | 54153.5 |
| cytochrome c peroxidase | SAMN05421639_102333 | Not Available | Positive | 1597109 - 1598929 | 68837.9 |
| hypothetical protein | SAMN05421639_102334 | Not Available | Positive | 1599083 - 1601497 | 94429.1 |
| hypothetical protein | SAMN05421639_102335 | Not Available | Positive | 1601569 - 1601805 | 9491.31 |
| peptidase family m28 | SAMN05421639_102336 | Not Available | Positive | 1601815 - 1603284 | 55709.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
