Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl esterase/lipase | SAMN05421639_102317 | Not Available | Positive | 1579532 - 1580401 | 33391.7 |
| membrane-associated protein | SAMN05421639_102318 | Not Available | Negative | 1580445 - 1581140 | 26314.6 |
| peptide chain release factor 2 | SAMN05421639_102319 | Not Available | Negative | 1581228 - 1582340 | 42435.2 |
| hypothetical protein | SAMN05421639_102320 | Not Available | Positive | 1582589 - 1582870 | 11132.5 |
| hypothetical protein | SAMN05421639_102321 | Not Available | Negative | 1582867 - 1583361 | 19223.9 |
| glycine/d-amino acid oxidase | SAMN05421639_102322 | Not Available | Negative | 1583379 - 1584485 | 42055.9 |
| atpase family associated with various cellular activities (aaa) | SAMN05421639_102323 | Not Available | Negative | 1584613 - 1585977 | 52524.0 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421639_102324 | Not Available | Negative | 1586109 - 1587104 | 37323.2 |
| abc-2 type transport system atp-binding protein | SAMN05421639_102325 | Not Available | Positive | 1587319 - 1588230 | 33713.8 |
| abc-2 family transporter protein | SAMN05421639_102326 | Not Available | Positive | 1588223 - 1589068 | 33056.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
