Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoisovalerate dehydrogenase e1 component | SAMN05421639_102297 | Not Available | Positive | 1555420 - 1557519 | 78158.7 |
| putative membrane protein | SAMN05421639_102298 | Not Available | Positive | 1557648 - 1558679 | 40173.6 |
| transcriptional regulator, asnc family | SAMN05421639_102299 | Not Available | Negative | 1558682 - 1559140 | 17825.8 |
| methionine-gamma-lyase | SAMN05421639_102300 | Not Available | Positive | 1559298 - 1560524 | 45203.9 |
| glycosyltransferase, gt2 family | SAMN05421639_102301 | Not Available | Negative | 1560578 - 1561582 | 38129.5 |
| hypothetical protein | SAMN05421639_102302 | Not Available | Negative | 1561829 - 1562236 | 15514.4 |
| putative n6-adenine-specific dna methylase | SAMN05421639_102303 | Not Available | Negative | 1562304 - 1563467 | 44777.8 |
| ubiquinone/menaquinone biosynthesis c-methylase ubie | SAMN05421639_102304 | Not Available | Positive | 1563603 - 1564331 | 28541.8 |
| zinc transporter zupt | SAMN05421639_102305 | Not Available | Positive | 1564328 - 1565056 | 26565.2 |
| long-chain fatty acid transport protein | SAMN05421639_102306 | Not Available | Negative | 1565143 - 1566546 | 51055.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
