Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase z | SAMN05421639_102277 | Not Available | Negative | 1524165 - 1525079 | 34681.7 |
| xtp/ditp diphosphohydrolase | SAMN05421639_102278 | Not Available | Negative | 1525280 - 1525855 | 21721.4 |
| hypothetical protein | SAMN05421639_102279 | Not Available | Negative | 1525914 - 1526744 | 31720.6 |
| hypothetical protein | SAMN05421639_102280 | Not Available | Positive | 1526853 - 1527545 | 26091.8 |
| hypothetical protein | SAMN05421639_102281 | Not Available | Positive | 1527555 - 1528259 | 27710.1 |
| bacterial peptide chain release factor 3 (brf-3) | SAMN05421639_102282 | Not Available | Positive | 1528533 - 1530128 | 60480.5 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102283 | Not Available | Negative | 1530194 - 1532518 | 84161.9 |
| hypothetical protein | SAMN05421639_102284 | Not Available | Negative | 1532535 - 1533029 | 18924.2 |
| protein of unknown function | SAMN05421639_102285 | Not Available | Positive | 1533530 - 1534492 | 35681.5 |
| oxalate decarboxylase | SAMN05421639_102286 | Not Available | Positive | 1534601 - 1535632 | 38024.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
