Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette, subfamily b | SAMN05421639_102237 | Not Available | Positive | 1474359 - 1476164 | 67980.5 |
| 3-oxoacid coa-transferase subunit a | SAMN05421639_102238 | Not Available | Negative | 1476243 - 1476944 | 25520.6 |
| morn repeat variant | SAMN05421639_102239 | Not Available | Positive | 1477219 - 1478742 | 57712.7 |
| protein of unknown function | SAMN05421639_102240 | Not Available | Positive | 1479084 - 1479770 | 26633.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102241 | Not Available | Negative | 1479880 - 1482618 | 102173.0 |
| large subunit ribosomal protein l19 | SAMN05421639_102242 | Not Available | Positive | 1482908 - 1483264 | 13881.0 |
| hypothetical protein | SAMN05421639_102243 | Not Available | Negative | 1483297 - 1483611 | 12233.7 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421639_102244 | Not Available | Negative | 1483742 - 1484731 | 38107.0 |
| threonine/homoserine efflux transporter rhta | SAMN05421639_102245 | Not Available | Negative | 1484813 - 1485793 | 35719.9 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102246 | Not Available | Negative | 1485920 - 1488517 | 93875.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
