Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine protease, c1a family | SAMN05421639_102227 | Not Available | Positive | 1462388 - 1463263 | 31355.5 |
| beta-mannosidase | SAMN05421639_102228 | Not Available | Negative | 1463337 - 1465823 | 96555.4 |
| copper homeostasis protein | SAMN05421639_102229 | Not Available | Negative | 1465975 - 1466637 | 24108.8 |
| n4-(beta-n-acetylglucosaminyl)-l-asparaginase | SAMN05421639_102230 | Not Available | Negative | 1466671 - 1467663 | 36020.3 |
| hypothetical protein | SAMN05421639_102231 | Not Available | Negative | 1467764 - 1468252 | 18129.4 |
| hypothetical protein | SAMN05421639_102232 | Not Available | Negative | 1468278 - 1468841 | 20410.7 |
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN05421639_102233 | Not Available | Negative | 1469275 - 1469898 | 23837.2 |
| hexosaminidase | SAMN05421639_102234 | Not Available | Negative | 1469921 - 1472173 | 84800.7 |
| protein of unknown function | SAMN05421639_102235 | Not Available | Positive | 1472277 - 1473092 | 28933.0 |
| 3-oxoacid coa-transferase subunit b | SAMN05421639_102236 | Not Available | Negative | 1473351 - 1474004 | 23403.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
