Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron complex transport system atp-binding protein | SAMN05421639_102197 | Not Available | Negative | 1430325 - 1431098 | 29178.1 |
| iron complex transport system permease protein | SAMN05421639_102198 | Not Available | Negative | 1431098 - 1432138 | 37060.9 |
| iron complex transport system substrate-binding protein | SAMN05421639_102199 | Not Available | Negative | 1432122 - 1433000 | 30969.8 |
| hmuy protein | SAMN05421639_102200 | Not Available | Negative | 1433022 - 1434128 | 40554.8 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN05421639_102201 | Not Available | Negative | 1434145 - 1436259 | 80365.1 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102202 | Not Available | Positive | 1436353 - 1437171 | 28950.7 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_102203 | Not Available | Positive | 1437367 - 1438656 | 47571.0 |
| quinol monooxygenase ygin | SAMN05421639_102204 | Not Available | Negative | 1438843 - 1439133 | 11445.6 |
| hypothetical protein | SAMN05421639_102205 | Not Available | Negative | 1439222 - 1440109 | 31927.5 |
| transcriptional regulator, badm/rrf2 family | SAMN05421639_102206 | Not Available | Negative | 1440312 - 1440719 | 15174.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
