Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indole-3-glycerol phosphate synthase | SAMN05421639_102177 | Not Available | Positive | 1414073 - 1414852 | 29538.2 |
| phosphoribosylanthranilate isomerase | SAMN05421639_102178 | Not Available | Positive | 1414925 - 1415611 | 25937.7 |
| rep element-mobilizing transposase rayt | SAMN05421639_102179 | Not Available | Positive | 1415657 - 1416109 | 17985.5 |
| hypothetical protein | SAMN05421639_102180 | Not Available | Positive | 1416197 - 1416718 | 20738.9 |
| hypothetical protein | SAMN05421639_102181 | Not Available | Positive | 1416702 - 1417247 | 21240.2 |
| tryptophan synthase, beta chain | SAMN05421639_102182 | Not Available | Positive | 1417252 - 1418430 | 43079.4 |
| tryptophan synthase, alpha chain | SAMN05421639_102183 | Not Available | Positive | 1418523 - 1419257 | 27030.5 |
| lipoyl(octanoyl) transferase | SAMN05421639_102184 | Not Available | Positive | 1419337 - 1420065 | 27687.2 |
| cubico group peptidase, beta-lactamase class c family | SAMN05421639_102185 | Not Available | Positive | 1420235 - 1421284 | 39310.4 |
| hypothetical protein | SAMN05421639_102186 | Not Available | Positive | 1421578 - 1422540 | 35069.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
